STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGG89139.1PFAM: Bacterial shufflon protein, N-terminal constant region; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (480 aa)    
Predicted Functional Partners:
AGG89137.1
Type II secretory pathway, component PulF; PFAM: Bacterial type II secretion system protein F domain.
 
  
 0.901
AGG89140.1
Soluble lytic murein transglycosylase-like protein; PFAM: Transglycosylase SLT domain.
 
     0.895
AGG89132.1
PFAM: Secretin N-terminal domain; Bacterial type II and III secretion system protein; TIGRFAM: type IVB pilus formation outer membrane protein, R64 PilN family.
 
  
 0.840
AGG90782.1
TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
  
 
 0.816
AGG89136.1
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; PFAM: Type II/IV secretion system protein.
 
 
 0.785
AGG90781.1
Type II secretory pathway, component PulK; PFAM: General secretion pathway protein K.
  
 
 0.782
AGG90787.1
Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.613
AGG90786.1
PFAM: Bacterial type II secretion system protein F domain; TIGRFAM: general secretion pathway protein F.
 
  
 0.610
AGG90892.1
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain.
 
 
 0.606
AGG89465.1
PFAM: Competence protein; Metallo-beta-lactamase superfamily; TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.603
Your Current Organism:
Rhodanobacter denitrificans
NCBI taxonomy Id: 666685
Other names: DSM 23569, JCM 17641, R. denitrificans, Rhodanobacter denitrificans Prakash et al. 2012, Rhodanobacter sp. 116-2, Rhodanobacter sp. 2APBS1, Rhodanobacter sp. FW104-R3, strain 2APBS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.