STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGG89154.1Hypothetical protein. (248 aa)    
Predicted Functional Partners:
AGG89155.1
Hypothetical protein.
       0.773
AGG89150.1
PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
       0.675
AGG89151.1
Hypothetical protein.
       0.675
AGG89152.1
Hypothetical protein.
       0.675
AGG89153.1
Hypothetical protein.
       0.675
AGG89156.1
PFAM: Plasmid replication region DNA-binding N-term.
       0.482
AGG89157.1
Hypothetical protein.
       0.482
AGG89148.1
RES domain-containing protein; PFAM: RES domain.
       0.405
AGG89149.1
Hypothetical protein.
       0.405
Your Current Organism:
Rhodanobacter denitrificans
NCBI taxonomy Id: 666685
Other names: DSM 23569, JCM 17641, R. denitrificans, Rhodanobacter denitrificans Prakash et al. 2012, Rhodanobacter sp. 116-2, Rhodanobacter sp. 2APBS1, Rhodanobacter sp. FW104-R3, strain 2APBS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.