STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK52018.1Positive control sigma-like factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog. (170 aa)    
Predicted Functional Partners:
AGK52022.1
Putative phage-like terminase large subunit, skin element YqaT; COG1783 Phage terminase large subunit.
 
  
 0.775
AGK52024.1
Phage Mu protein F like protein; COG0001 Glutamate-1-semialdehyde aminotransferase.
 
     0.737
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.573
AGK51992.1
DNA integration/recombination protein; COG0582 Integrase; Belongs to the 'phage' integrase family.
  
    0.573
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.540
AGK51940.1
anti-sigma(W) factor; COG0474 Cation transport ATPase.
  
 
 0.514
AGK52904.1
Hypothetical protein.
  
 
 0.514
AGK54194.1
Hypothetical protein; COG5662 Predicted transmembrane transcriptional regulator (anti-sigma factor).
  
 
 0.480
AGK52008.1
IstB domain-containing protein ATP-binding protein; COG1484 DNA replication protein.
  
    0.465
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.463
Your Current Organism:
Bacillus sp. 1NLA3E
NCBI taxonomy Id: 666686
Other names: B. sp. 1NLA3E
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.