AGK53864.1 protein (Bacillus sp. 1NLA3E) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGK53864.1

ABC transporter; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. (518 aa)

Predicted Functional Partners:

rplD

0.677

rpsI

0.674

rplU

0.671

rpsC

0.669

rpsO

0.669

rplC

0.665

rplT

0.660

rplM

0.655

rpsG

0.651

rpmA

0.651

Your Current Organism:

Bacillus sp. 1NLA3E

NCBI taxonomy Id: 666686
Other names: B. sp. 1NLA3E

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGK53864.1	rplC	B1NLA3E_10530	B1NLA3E_00540	ABC transporter; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.665
AGK53864.1	rplD	B1NLA3E_10530	B1NLA3E_00545	ABC transporter; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.677
AGK53864.1	rplM	B1NLA3E_10530	B1NLA3E_00705	ABC transporter; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.655
AGK53864.1	rplT	B1NLA3E_10530	B1NLA3E_17070	ABC transporter; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.660
AGK53864.1	rplU	B1NLA3E_10530	B1NLA3E_16640	ABC transporter; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.671
AGK53864.1	rpmA	B1NLA3E_10530	B1NLA3E_16630	ABC transporter; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	COG0211 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.651
AGK53864.1	rpsC	B1NLA3E_10530	B1NLA3E_00570	ABC transporter; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.669
AGK53864.1	rpsG	B1NLA3E_10530	B1NLA3E_00515	ABC transporter; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.651
AGK53864.1	rpsI	B1NLA3E_10530	B1NLA3E_00710	ABC transporter; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.674
AGK53864.1	rpsO	B1NLA3E_10530	B1NLA3E_06665	ABC transporter; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.669
rplC	AGK53864.1	B1NLA3E_00540	B1NLA3E_10530	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	ABC transporter; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	0.665
rplC	rplD	B1NLA3E_00540	B1NLA3E_00545	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.998
rplC	rplM	B1NLA3E_00540	B1NLA3E_00705	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.998
rplC	rplT	B1NLA3E_00540	B1NLA3E_17070	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.988
rplC	rplU	B1NLA3E_00540	B1NLA3E_16640	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.986
rplC	rpmA	B1NLA3E_00540	B1NLA3E_16630	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	COG0211 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.990
rplC	rpsC	B1NLA3E_00540	B1NLA3E_00570	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.995
rplC	rpsG	B1NLA3E_00540	B1NLA3E_00515	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.994
rplC	rpsI	B1NLA3E_00540	B1NLA3E_00710	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.994
rplC	rpsO	B1NLA3E_00540	B1NLA3E_06665	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.988