E9GMP4_DAPPU protein (Daphnia pulex) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

E9GMP4_DAPPU

Uncharacterized protein. (821 aa)

Predicted Functional Partners:

E9FX75_DAPPU

0.657

E9FVL6_DAPPU

0.576

E9GD71_DAPPU

0.576

E9H8P5_DAPPU

0.575

E9HSI1_DAPPU

0.572

E9GEL1_DAPPU

0.541

E9H737_DAPPU

0.516

Your Current Organism:

Daphnia pulex

NCBI taxonomy Id: 6669
Other names: D. pulex, common water flea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E9FVL6_DAPPU	E9GMP4_DAPPU	E9FVL6	E9GMP4	Uncharacterized protein.	Uncharacterized protein.	0.576
E9FX75_DAPPU	E9GMP4_DAPPU	E9FX75	E9GMP4	Uncharacterized protein.	Uncharacterized protein.	0.657
E9GD71_DAPPU	E9GMP4_DAPPU	E9GD71	E9GMP4	Uncharacterized protein.	Uncharacterized protein.	0.576
E9GEL1_DAPPU	E9GMP4_DAPPU	E9GEL1	E9GMP4	Uncharacterized protein.	Uncharacterized protein.	0.541
E9GMP4_DAPPU	E9FVL6_DAPPU	E9GMP4	E9FVL6	Uncharacterized protein.	Uncharacterized protein.	0.576
E9GMP4_DAPPU	E9FX75_DAPPU	E9GMP4	E9FX75	Uncharacterized protein.	Uncharacterized protein.	0.657
E9GMP4_DAPPU	E9GD71_DAPPU	E9GMP4	E9GD71	Uncharacterized protein.	Uncharacterized protein.	0.576
E9GMP4_DAPPU	E9GEL1_DAPPU	E9GMP4	E9GEL1	Uncharacterized protein.	Uncharacterized protein.	0.541
E9GMP4_DAPPU	E9H737_DAPPU	E9GMP4	E9H737	Uncharacterized protein.	DUF3456 domain-containing protein.	0.516
E9GMP4_DAPPU	E9H8P5_DAPPU	E9GMP4	E9H8P5	Uncharacterized protein.	Uncharacterized protein.	0.575
E9GMP4_DAPPU	E9HSI1_DAPPU	E9GMP4	E9HSI1	Uncharacterized protein.	Nucleoside diphosphate kinase.	0.572
E9H737_DAPPU	E9GMP4_DAPPU	E9H737	E9GMP4	DUF3456 domain-containing protein.	Uncharacterized protein.	0.516
E9H737_DAPPU	E9HSI1_DAPPU	E9H737	E9HSI1	DUF3456 domain-containing protein.	Nucleoside diphosphate kinase.	0.485
E9H8P5_DAPPU	E9GMP4_DAPPU	E9H8P5	E9GMP4	Uncharacterized protein.	Uncharacterized protein.	0.575
E9HSI1_DAPPU	E9GMP4_DAPPU	E9HSI1	E9GMP4	Nucleoside diphosphate kinase.	Uncharacterized protein.	0.572
E9HSI1_DAPPU	E9H737_DAPPU	E9HSI1	E9H737	Nucleoside diphosphate kinase.	DUF3456 domain-containing protein.	0.485