E9GN37_DAPPU protein (Daphnia pulex) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

E9GN37_DAPPU

Uncharacterized protein. (655 aa)

Predicted Functional Partners:

E9GGQ2_DAPPU

0.905

E9FV61_DAPPU

0.883

E9FU30_DAPPU

0.861

E9HD18_DAPPU

0.760

E9GDK1_DAPPU

0.748

E9FSD1_DAPPU

0.697

TSC2

0.643

E9FSM2_DAPPU

0.583

E9HAS1_DAPPU

0.583

E9HS82_DAPPU

0.583

Your Current Organism:

Daphnia pulex

NCBI taxonomy Id: 6669
Other names: D. pulex, common water flea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E9FSD1_DAPPU	E9GN37_DAPPU	E9FSD1	E9GN37	Uncharacterized protein.	Uncharacterized protein.	0.697
E9FSM2_DAPPU	E9FU30_DAPPU	E9FSM2	E9FU30	RING-type domain-containing protein.	CPSF_A domain-containing protein.	0.915
E9FSM2_DAPPU	E9GDK1_DAPPU	E9FSM2	E9GDK1	RING-type domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.890
E9FSM2_DAPPU	E9GGQ2_DAPPU	E9FSM2	E9GGQ2	RING-type domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.924
E9FSM2_DAPPU	E9GN37_DAPPU	E9FSM2	E9GN37	RING-type domain-containing protein.	Uncharacterized protein.	0.583
E9FSM2_DAPPU	E9HD18_DAPPU	E9FSM2	E9HD18	RING-type domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.913
E9FU30_DAPPU	E9FSM2_DAPPU	E9FU30	E9FSM2	CPSF_A domain-containing protein.	RING-type domain-containing protein.	0.915
E9FU30_DAPPU	E9GDK1_DAPPU	E9FU30	E9GDK1	CPSF_A domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.998
E9FU30_DAPPU	E9GGQ2_DAPPU	E9FU30	E9GGQ2	CPSF_A domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.715
E9FU30_DAPPU	E9GN37_DAPPU	E9FU30	E9GN37	CPSF_A domain-containing protein.	Uncharacterized protein.	0.861
E9FU30_DAPPU	E9HAS1_DAPPU	E9FU30	E9HAS1	CPSF_A domain-containing protein.	RING-type domain-containing protein.	0.915
E9FU30_DAPPU	E9HD18_DAPPU	E9FU30	E9HD18	CPSF_A domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.650
E9FU30_DAPPU	E9HS82_DAPPU	E9FU30	E9HS82	CPSF_A domain-containing protein.	RING-type domain-containing protein.	0.915
E9FV61_DAPPU	E9GN37_DAPPU	E9FV61	E9GN37	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Uncharacterized protein.	0.883
E9GDK1_DAPPU	E9FSM2_DAPPU	E9GDK1	E9FSM2	CULLIN_2 domain-containing protein; Belongs to the cullin family.	RING-type domain-containing protein.	0.890
E9GDK1_DAPPU	E9FU30_DAPPU	E9GDK1	E9FU30	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CPSF_A domain-containing protein.	0.998
E9GDK1_DAPPU	E9GGQ2_DAPPU	E9GDK1	E9GGQ2	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.620
E9GDK1_DAPPU	E9GN37_DAPPU	E9GDK1	E9GN37	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.748
E9GDK1_DAPPU	E9HAS1_DAPPU	E9GDK1	E9HAS1	CULLIN_2 domain-containing protein; Belongs to the cullin family.	RING-type domain-containing protein.	0.890
E9GDK1_DAPPU	E9HD18_DAPPU	E9GDK1	E9HD18	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.592