E9HJU5_DAPPU protein (Daphnia pulex) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

E9HJU5_DAPPU

Uncharacterized protein. (221 aa)

Predicted Functional Partners:

E9H8T2_DAPPU

0.554

E9GHI4_DAPPU

0.524

E9HR94_DAPPU

0.520

E9FYU9_DAPPU

0.505

E9G1A5_DAPPU

0.505

E9G252_DAPPU

0.505

EOG090X0PCK

0.505

E9GRK0_DAPPU

0.505

E9HPU7_DAPPU

0.505

E9FWX2_DAPPU

0.504

Your Current Organism:

Daphnia pulex

NCBI taxonomy Id: 6669
Other names: D. pulex, common water flea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E9FWX2_DAPPU	E9FYU9_DAPPU	E9FWX2	E9FYU9	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	RPOL4c domain-containing protein.	0.999
E9FWX2_DAPPU	E9G1A5_DAPPU	E9FWX2	E9G1A5	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	RPOLD domain-containing protein.	0.999
E9FWX2_DAPPU	E9G252_DAPPU	E9FWX2	E9G252	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.999
E9FWX2_DAPPU	E9GHI4_DAPPU	E9FWX2	E9GHI4	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
E9FWX2_DAPPU	E9GRK0_DAPPU	E9FWX2	E9GRK0	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.999
E9FWX2_DAPPU	E9H8T2_DAPPU	E9FWX2	E9H8T2	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.988
E9FWX2_DAPPU	E9HJU5_DAPPU	E9FWX2	E9HJU5	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.504
E9FWX2_DAPPU	E9HPU7_DAPPU	E9FWX2	E9HPU7	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.999
E9FWX2_DAPPU	E9HR94_DAPPU	E9FWX2	E9HR94	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Transcription elongation factor SPT5.	0.994
E9FWX2_DAPPU	EOG090X0PCK	E9FWX2	E9G2Q6	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	EOG090X0PCK.	0.999
E9FYU9_DAPPU	E9FWX2_DAPPU	E9FYU9	E9FWX2	RPOL4c domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
E9FYU9_DAPPU	E9G1A5_DAPPU	E9FYU9	E9G1A5	RPOL4c domain-containing protein.	RPOLD domain-containing protein.	0.999
E9FYU9_DAPPU	E9G252_DAPPU	E9FYU9	E9G252	RPOL4c domain-containing protein.	Uncharacterized protein.	0.999
E9FYU9_DAPPU	E9GHI4_DAPPU	E9FYU9	E9GHI4	RPOL4c domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
E9FYU9_DAPPU	E9GRK0_DAPPU	E9FYU9	E9GRK0	RPOL4c domain-containing protein.	Uncharacterized protein.	0.999
E9FYU9_DAPPU	E9H8T2_DAPPU	E9FYU9	E9H8T2	RPOL4c domain-containing protein.	Uncharacterized protein.	0.988
E9FYU9_DAPPU	E9HJU5_DAPPU	E9FYU9	E9HJU5	RPOL4c domain-containing protein.	Uncharacterized protein.	0.505
E9FYU9_DAPPU	E9HPU7_DAPPU	E9FYU9	E9HPU7	RPOL4c domain-containing protein.	Uncharacterized protein.	0.999
E9FYU9_DAPPU	E9HR94_DAPPU	E9FYU9	E9HR94	RPOL4c domain-containing protein.	Transcription elongation factor SPT5.	0.998
E9FYU9_DAPPU	EOG090X0PCK	E9FYU9	E9G2Q6	RPOL4c domain-containing protein.	EOG090X0PCK.	0.999