Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC0032Oligopeptide ABC transporter permease. (296 aa)    
Predicted Functional Partners:
ABC0031
Oligopeptide ABC transporter permease.
 
 
 0.971
ABC0030
Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.936
ABC0029
Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.925
ABC0233
Dipeptide/oligopeptide/nickel ABC transporter permease.
 
 
 0.906
ABC0565
Oligopeptide ABC transporter permease.
 
 
 0.906
ABC1241
Oligopeptide ABC transporter permease.
 
 
 0.906
ABC3660
Oligopeptide ABC transporter permease.
 
 
 0.906
ABC2413
Oligopeptide ABC transporter permease.
 
 
 0.905
ABC4065
Oligopeptide ABC transporter permease.
 
 
 0.905
ABC3092
Oligopeptide ABC transporter permease.
 
 
 0.889
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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