STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0062Transcriptional regulator. (154 aa)    
Predicted Functional Partners:
ABC3332
Major facilitator (MFS) superfamily macrolide-efflux protein.
 
     0.694
ABC0196
Conserved hypothetical protein.
  
    0.513
ABC2531
Conserved hypothetical protein.
  
   
 0.496
ABC1817
Transcriptional regulator.
  
     0.484
ABC0843
ArsR family transcriptional regulator.
  
     0.471
ABC3638
Conserved hypothetical protein.
 
    0.459
ABC1397
Conserved hypothetical protein.
  
     0.439
ABC0279
GNAT family acetyltransferase; Probable gene remnant. Similar to the C-terminal region of Bacillus subtilis YdfD protein SW:P96681 (482 aa); locus_tag:ABC0277.
  
     0.418
ABC0392
Hypothetical protein.
 
     0.410
ABC0842
Conserved hypothetical protein.
 
   
 0.404
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.