STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0066Conserved hypothetical protein. (567 aa)    
Predicted Functional Partners:
opuAA
Glycine betaine ABC transporter ATP-binding protein.
  
 
 0.879
opuAB
Glycine betaine ABC transporter permease.
  
  
 0.711
ABC0065
Conserved hypothetical protein.
       0.527
ABC0333
Conserved hypothetical protein.
  
     0.477
ABC0067
TatD family deoxyribonuclease.
       0.471
ABC0068
Conserved hypothetical protein.
  
    0.436
ABC3794
Transposase.
  
     0.429
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
    0.425
ABC2090
Conserved hypothetical protein.
  
     0.422
gerKB
Spore germination protein KB.
  
     0.418
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.