Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sspFSmall acid-soluble spore protein. (58 aa)    
Predicted Functional Partners:
tlp
Conserved hypothetical protein; Belongs to the Tlp family.
  
  
 0.769
veg
Veg protein.
 
     0.753
ABC2205
Conserved hypothetical protein.
  
    0.694
purR
Transcriptional repressor of the purine operon.
 
     0.670
ABC0071
Conserved hypothetical protein.
 
     0.660
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
       0.650
sspB
Small acid-soluble spore protein.
  
  
 0.606
sspI
Small acid-soluble spore protein; Belongs to the SspI family.
  
  
 0.596
ABC0076
Translation initiation inhibitor.
       0.590
spoVT
Transcriptional regulator stage V sporulation protein T.
 
  
 0.572
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
Server load: low (14%) [HD]