Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC0097Conserved hypothetical protein. (187 aa)    
Predicted Functional Partners:
ABC0096
Conserved hypothetical protein.
 
  
 0.989
divIC
Cell-division initiation protein.
 
    0.882
spoIIE
Serine phosphatase stage II sporulation protein E.
 
     0.814
ABC0102
Conserved hypothetical protein.
 
     0.804
bofA
Inhibition of the pro-sigma-K processing machinery.
  
   
 0.786
spoIIP
Stage II sporulation protein P; Septal wall dissolution protein.
  
  
 0.782
spoIIIAF
Stage III sporulation protein AF.
  
    0.778
ABC0082
Conserved hypothetical protein.
 
    0.773
ABC2626
Stage VI sporulation protein D.
  
     0.772
ABC2484
Conserved hypothetical protein.
  
     0.770
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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