Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC0102Conserved hypothetical protein. (245 aa)    
Predicted Functional Partners:
ABC0103
Serine/threonine protein kinase.
 
  
 0.986
spoIIE
Serine phosphatase stage II sporulation protein E.
 
  
 0.972
ABC2626
Stage VI sporulation protein D.
  
    0.814
ABC0097
Conserved hypothetical protein.
 
     0.804
spoIVFA
Stage IV sporulation protein FA.
  
    0.804
tilS
Cell-cycle protein; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
       0.788
gerM
Germination protein GerM.
  
    0.775
ABC2484
Conserved hypothetical protein.
  
     0.770
ABC2536
Conserved hypothetical protein; Belongs to the UPF0736 family.
  
     0.766
spoIIIAF
Stage III sporulation protein AF.
  
     0.765
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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