STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0196Conserved hypothetical protein. (145 aa)    
Predicted Functional Partners:
ABC0392
Hypothetical protein.
  
     0.708
ABC0279
GNAT family acetyltransferase; Probable gene remnant. Similar to the C-terminal region of Bacillus subtilis YdfD protein SW:P96681 (482 aa); locus_tag:ABC0277.
  
     0.698
ABC2531
Conserved hypothetical protein.
 
     0.598
ABC3332
Major facilitator (MFS) superfamily macrolide-efflux protein.
  
     0.592
ABC1817
Transcriptional regulator.
  
    0.549
ABC0062
Transcriptional regulator.
  
    0.513
ABC2040
Conserved hypothetical protein.
  
  
 0.490
ABC3673
Conserved hypothetical protein.
  
  
 0.490
ABC0415
Hypothetical protein.
  
     0.479
ABC0637
Hypothetical protein.
  
     0.471
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.