STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0223sigma-L-dependent transcriptional regulator. (580 aa)    
Predicted Functional Partners:
ABC0306
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
 
     0.681
bkdR
sigma-L-dependent transcriptional regulator.
  
     0.679
kdgT
2-keto-3-deoxygluconate permease.
 
     0.678
ABC0964
Transcriptional regulator.
  
     0.658
rocR
Transcriptional activator of arginine utilization operon.
  
     0.648
ABC0307
Conserved hypothetical protein.
 
     0.617
ABC0045
Transcriptional regulator.
  
     0.568
ABC0660
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
 
     0.555
ABC0221
Alcohol dehydrogenase.
  
    0.531
sigL
DNA-directed RNA polymerase sigma-54 factor sigma-L.
 
   
 0.500
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.