Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC0227Conserved hypothetical protein. (461 aa)    
Predicted Functional Partners:
cccB
Cytochrome c551.
  
    0.786
ABC0229
Conserved hypothetical protein.
       0.716
ABC0230
Conserved hypothetical protein.
       0.700
ABC2437
Conserved hypothetical protein.
  
    0.679
ABC0226
Conserved hypothetical protein.
       0.494
ABC1948
Siderophore biosynthesis protein.
 
    0.488
ABC1947
Siderophore biosynthesis protein.
 
    0.400
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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