STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0233Dipeptide/oligopeptide/nickel ABC transporter permease. (312 aa)    
Predicted Functional Partners:
ABC0232
Dipeptide/oligopeptide/nickel ABC transporter permease.
  
 0.964
ABC0234
Dipeptide/oligopeptide/nickel ABC transporter substrate-binding protein.
 
 
 0.955
ABC0231
Dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein.
 
  
 0.901
ABC0032
Oligopeptide ABC transporter permease.
  
 0.851
ABC1242
Oligopeptide ABC transporter permease.
  
 0.851
ABC2412
Oligopeptide ABC transporter permease.
  
 0.850
ABC4064
Oligopeptide ABC transporter permease.
  
 0.850
ABC0566
Oligopeptide ABC transporter permease.
  
 0.841
ABC1608
Oligopeptide ABC transporter permease.
  
 0.841
ABC3659
Oligopeptide ABC transporter permease.
  
 0.841
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.