STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0269Cadmium-transporting ATPase. (709 aa)    
Predicted Functional Partners:
ABC0268
Cadmium efflux system accessory protein.
 
  
 0.835
copZ
Copper chaperon.
  
 
 0.752
trkA
Trk family potassium transport system protein.
 
  
 0.747
ABC3390
ArsR family transcriptional regulator.
 
  
 0.623
ABC0271
Conserved hypothetical protein.
       0.471
ABC0272
Hypothetical protein.
       0.471
czcD
Cation (Co/Zn/Cd) efflux transporter.
 
  
 0.420
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.