Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC0271Conserved hypothetical protein. (171 aa)    
Predicted Functional Partners:
ABC0272
Hypothetical protein.
       0.773
trkA
Trk family potassium transport system protein.
 
 
 0.667
ABC0525
Conserved hypothetical protein.
 
     0.626
ABC3809
Hypothetical protein.
  
    0.533
ABC3309
Conserved hypothetical protein.
  
     0.525
ABC3986
Hypothetical protein.
  
     0.523
ABC0273
S-adenosylmethionine (SAM)-dependent methyltransferase.
       0.518
ABC1530
Conserved hypothetical protein.
  
    0.507
ABC0211
GNAT family acetyltransferase.
 
    0.484
ABC0269
Cadmium-transporting ATPase.
       0.471
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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