STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0283Ribosomal-protein-alanine acetyltransferase. (157 aa)    
Predicted Functional Partners:
ABC0282
ADP-ribose pyrophosphatase.
 
    0.761
ABC0843
ArsR family transcriptional regulator.
  
     0.622
ABC1431
Phosphoglycerate mutase.
 
     0.579
ABC0461
MutT/nudix family phosphohydrolase; Belongs to the Nudix hydrolase family.
 
    0.546
ABC1280
Lysine/ornithine N-monooxygenase.
  
  
 0.452
ABC1998
Conserved hypothetical protein.
  
     0.437
rncS
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.410
ABC2118
Conserved hypothetical protein.
 
     0.408
ABC0842
Conserved hypothetical protein.
 
    0.400
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.