Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABC0302Transcriptional repressor of the hexuronate utilization operon. (324 aa)    
Predicted Functional Partners:
ABC3473
Conserved hypothetical protein.
  
     0.767
gltA
Glutamate synthase large subunit.
    
 
 0.761
ABC0301
C4-dicarboxylate transport system substrate-binding protein.
       0.551
ABC0300
C4-dicarboxylate transport system permease small protein.
       0.519
ptsH
PTS system histidine-containing phosphocarrier protein HPr.
   
 
 0.512
ABC0299
C4-dicarboxylate transport system permease large protein.
       0.466
ABC0303
MarR family transcriptional regulator.
       0.441
ABC0304
Multidrug ABC transporter ATP-binding protein.
       0.441
ABC0298
Alpha-glucosidase; Belongs to the glycosyl hydrolase 31 family.
     
 0.412
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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