STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdgT2-keto-3-deoxygluconate permease. (328 aa)    
Predicted Functional Partners:
ABC0307
Conserved hypothetical protein.
 
   
 0.931
ABC0306
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
 
     0.907
ABC0310
sigma-L-dependent transcriptional regulator.
 
     0.859
ABC0223
sigma-L-dependent transcriptional regulator.
 
     0.678
ABC3136
2-dehydro-3-deoxyphosphogluconate aldolase.
  
  
 0.668
ABC0523
2-dehydro-3-deoxyphosphogluconate aldolase.
  
  
 0.572
ABC0660
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
 
     0.510
ABC0659
Conserved hypothetical protein.
 
   
 0.471
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.