Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC0333Conserved hypothetical protein. (136 aa)    
Predicted Functional Partners:
ABC0203
Conserved hypothetical protein.
  
  
 0.600
ABC1969
Hypothetical protein.
  
     0.592
ABC1482
Conserved hypothetical protein.
  
     0.588
ABC2383
Conserved hypothetical protein.
  
    0.574
ABC1436
Multidrug ABC transporter permease.
  
     0.561
ABC0332
Germination protein.
       0.546
ABC2211
Conserved hypothetical protein.
  
     0.542
ABC3113
Glycosyl hydrolase.
 
     0.524
bofA
Inhibition of the pro-sigma-K processing machinery.
  
     0.523
ABC2684
Conserved hypothetical protein.
  
     0.517
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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