Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC0362Polysaccharide ABC transporter permease. (292 aa)    
Predicted Functional Partners:
ABC0361
Polysaccharide ABC transporter permease.
 
 
 0.988
ABC0556
Sugar ABC transporter permease.
 
 
 0.957
ABC0727
Polysaccharide ABC transporter permease.
 
 
 0.957
ABC1135
Polysaccharide ABC transporter permease.
 
 
 0.957
ABC3119
Sugar ABC transporter permease.
 
 
 0.957
ABC0354
Glycerol-3-phosphate ABC transporter permease.
  
 
 
0.909
ABC0358
Conserved hypothetical protein.
 
   0.851
ABC3117
Sugar ABC transporter substrate-binding protein.
 
   0.850
ABC0558
Sugar ABC transporter substrate-binding protein.
 
   0.804
lplB
Sugar ABC transporter permease.
 
  
 0.796
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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