STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC0373AraC/XylS family transcriptional regulator. (323 aa)    
Predicted Functional Partners:
rhaAB
Rhamnulokinase and L-rhamnose isomerase; In the N-terminal section; belongs to the rhamnulokinase family.
 
  
 0.813
ABC1456
AraC/XylS family transcriptional regulator.
  
   0.766
ABC0684
AraC/XylS family transcriptional regulator.
  
   0.752
ABC1404
Transcriptional regulator.
 
   0.735
ABC2968
AraC/XylS family transcriptional regulator.
  
     0.731
ABC1211
AraC/XylS family transcriptional regulator.
  
     0.716
ABC0733
AraC/XylS family transcriptional regulator.
  
     0.701
ABC3475
AraC/XylS family transcriptional regulator.
  
     0.634
rhaM
Conserved hypothetical protein; Involved in the anomeric conversion of L-rhamnose.
 
     0.510
ABC0375
Conserved hypothetical protein.
       0.489
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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