STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0385Lactose ABC transporter substrate-binding protein. (437 aa)    
Predicted Functional Partners:
ABC0386
Lactose ABC transporter permease.
 
 
 0.951
ABC0387
Lactose ABC transporter permease.
 
 
 0.942
ABC0395
Lactose ABC transporter permease.
 
 
 0.837
ABC0396
Lactose ABC transporter permease.
 
 
 0.791
ABC0380
Conserved hypothetical protein.
 
     0.733
ABC0381
Sugar phosphate isomerases/epimerase.
 
    0.698
ABC0398
Sugar ABC transporter substrate-binding protein.
  
     0.696
ABC1144
Sugar ABC transporter substrate-binding protein.
  
  
 0.682
ABC1152
Oxidoreductase.
 
     0.678
ABC0379
Oxidoreductase.
 
     0.660
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.