Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC0386Lactose ABC transporter permease. (314 aa)    
Predicted Functional Partners:
ABC0387
Lactose ABC transporter permease.
 
 
 0.970
ABC0385
Lactose ABC transporter substrate-binding protein.
 
 
 0.953
ABC0395
Lactose ABC transporter permease.
  
  
 
0.901
ABC0396
Lactose ABC transporter permease.
 
 
 0.874
ABC0394
Lactose ABC transporter substrate-binding protein.
 
 
 0.858
ABC3280
Sugar ABC transporter permease.
 
   0.854
ABC3776
Sugar ABC transporter permease.
 
   0.847
ABC0318
Sugar ABC transporter permease.
 
   0.846
ABC1215
Sugar ABC transporter permease.
 
   0.845
ABC0687
Sugar ABC transporter permease.
 
   0.842
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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