STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0393Conserved hypothetical protein. (932 aa)    
Predicted Functional Partners:
ABC0394
Lactose ABC transporter substrate-binding protein.
 
  
 0.911
ABC0320
Mannan endo-1,4-beta-mannosidase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
 
 0.900
ABC3369
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
  
 0.756
pelB
Pectate lyase.
  
   
 0.702
ABC1144
Sugar ABC transporter substrate-binding protein.
 
  
 0.700
ABC0395
Lactose ABC transporter permease.
 
    0.664
ABC3588
Hypothetical protein.
  
     0.652
abfA
alpha-L-arabinofuranosidase.
 
  
 0.641
ABC3589
Conserved hypothetical protein.
  
     0.611
ABC0396
Lactose ABC transporter permease.
 
    0.606
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.