Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC0394Lactose ABC transporter substrate-binding protein. (470 aa)    
Predicted Functional Partners:
ABC0395
Lactose ABC transporter permease.
 
 
 0.915
ABC0393
Conserved hypothetical protein.
 
  
 0.911
ABC0396
Lactose ABC transporter permease.
 
 
 0.888
ABC0386
Lactose ABC transporter permease.
 
 
 0.858
ABC0387
Lactose ABC transporter permease.
 
 
 0.828
abfA
alpha-L-arabinofuranosidase.
 
  
 0.729
ABC0380
Conserved hypothetical protein.
 
     0.688
ABC1144
Sugar ABC transporter substrate-binding protein.
  
  
 0.684
ABC0381
Sugar phosphate isomerases/epimerase.
 
    0.669
ABC3281
Sugar ABC transporter permease.
 
 
 0.666
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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