ABC0395 protein (Bacillus clausii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABC0395

Lactose ABC transporter permease. (266 aa)

Predicted Functional Partners:

ABC0396

0.968

ABC0394

0.911

ABC0386

0.901

ABC0400

0.882

ABC0387

0.866

ABC3280

0.856

ABC3776

0.851

ABC0318

0.850

ABC1215

0.850

ABC0687

0.848

Your Current Organism:

Bacillus clausii

NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ABC0318	ABC0386	Sugar ABC transporter permease.	Lactose ABC transporter permease.	0.849
ABC0318	ABC0394	Sugar ABC transporter permease.	Lactose ABC transporter substrate-binding protein.	0.461
ABC0318	ABC0395	Sugar ABC transporter permease.	Lactose ABC transporter permease.	0.850
ABC0386	ABC0318	Lactose ABC transporter permease.	Sugar ABC transporter permease.	0.849
ABC0386	ABC0387	Lactose ABC transporter permease.	Lactose ABC transporter permease.	0.968
ABC0386	ABC0394	Lactose ABC transporter permease.	Lactose ABC transporter substrate-binding protein.	0.851
ABC0386	ABC0395	Lactose ABC transporter permease.	Lactose ABC transporter permease.	0.901
ABC0386	ABC0396	Lactose ABC transporter permease.	Lactose ABC transporter permease.	0.866
ABC0386	ABC0400	Lactose ABC transporter permease.	Sugar ABC transporter permease.	0.823
ABC0386	ABC0687	Lactose ABC transporter permease.	Sugar ABC transporter permease.	0.845
ABC0386	ABC1215	Lactose ABC transporter permease.	Sugar ABC transporter permease.	0.848
ABC0386	ABC3280	Lactose ABC transporter permease.	Sugar ABC transporter permease.	0.855
ABC0386	ABC3776	Lactose ABC transporter permease.	Sugar ABC transporter permease.	0.850
ABC0387	ABC0386	Lactose ABC transporter permease.	Lactose ABC transporter permease.	0.968
ABC0387	ABC0394	Lactose ABC transporter permease.	Lactose ABC transporter substrate-binding protein.	0.824
ABC0387	ABC0395	Lactose ABC transporter permease.	Lactose ABC transporter permease.	0.866
ABC0394	ABC0318	Lactose ABC transporter substrate-binding protein.	Sugar ABC transporter permease.	0.461
ABC0394	ABC0386	Lactose ABC transporter substrate-binding protein.	Lactose ABC transporter permease.	0.851
ABC0394	ABC0387	Lactose ABC transporter substrate-binding protein.	Lactose ABC transporter permease.	0.824
ABC0394	ABC0395	Lactose ABC transporter substrate-binding protein.	Lactose ABC transporter permease.	0.911