ABC0410 protein (Bacillus clausii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABC0410

Ribose ABC transporter ATP-binding protein. (545 aa)

Predicted Functional Partners:

rbsC

0.992

rbsB

0.981

ABC0409

0.973

ABC0411

0.963

rbsD

0.933

rbsK

0.795

metS

0.777

rbsK-3

0.769

ABC3120

0.737

rbsR

0.737

Your Current Organism:

Bacillus clausii

NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABC0409	ABC0410	ABC0409	ABC0410	Ribose ABC transporter substrate-binding protein.	Ribose ABC transporter ATP-binding protein.	0.973
ABC0409	ABC0411	ABC0409	ABC0411	Ribose ABC transporter substrate-binding protein.	Ribose ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	0.998
ABC0409	rbsB	ABC0409	ABC3544	Ribose ABC transporter substrate-binding protein.	Ribose ABC transporter substrate-binding protein.	0.538
ABC0409	rbsC	ABC0409	ABC3545	Ribose ABC transporter substrate-binding protein.	Ribose ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	0.590
ABC0410	ABC0409	ABC0410	ABC0409	Ribose ABC transporter ATP-binding protein.	Ribose ABC transporter substrate-binding protein.	0.973
ABC0410	ABC0411	ABC0410	ABC0411	Ribose ABC transporter ATP-binding protein.	Ribose ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	0.963
ABC0410	ABC3120	ABC0410	ABC3120	Ribose ABC transporter ATP-binding protein.	Transcriptional regulator of sucrose operon.	0.737
ABC0410	metS	ABC0410	ABC0061	Ribose ABC transporter ATP-binding protein.	methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.777
ABC0410	rbsB	ABC0410	ABC3544	Ribose ABC transporter ATP-binding protein.	Ribose ABC transporter substrate-binding protein.	0.981
ABC0410	rbsC	ABC0410	ABC3545	Ribose ABC transporter ATP-binding protein.	Ribose ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	0.992
ABC0410	rbsD	ABC0410	ABC3547	Ribose ABC transporter ATP-binding protein.	Ribose ABC transporter auxiliary component; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.	0.933
ABC0410	rbsK	ABC0410	ABC3548	Ribose ABC transporter ATP-binding protein.	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	0.795
ABC0410	rbsK-3	ABC0410	ABC3643	Ribose ABC transporter ATP-binding protein.	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	0.769
ABC0410	rbsR	ABC0410	ABC3549	Ribose ABC transporter ATP-binding protein.	Transcriptional repressor of the ribose operon.	0.737
ABC0411	ABC0409	ABC0411	ABC0409	Ribose ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	Ribose ABC transporter substrate-binding protein.	0.998
ABC0411	ABC0410	ABC0411	ABC0410	Ribose ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	Ribose ABC transporter ATP-binding protein.	0.963
ABC0411	rbsB	ABC0411	ABC3544	Ribose ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	Ribose ABC transporter substrate-binding protein.	0.784
ABC3120	ABC0410	ABC3120	ABC0410	Transcriptional regulator of sucrose operon.	Ribose ABC transporter ATP-binding protein.	0.737
ABC3120	rbsB	ABC3120	ABC3544	Transcriptional regulator of sucrose operon.	Ribose ABC transporter substrate-binding protein.	0.859
ABC3120	rbsC	ABC3120	ABC3545	Transcriptional regulator of sucrose operon.	Ribose ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.	0.726