STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0416LytR/AlgR family response regulator. (361 aa)    
Predicted Functional Partners:
ABC0415
Hypothetical protein.
 
    0.924
lytS
Two-component sensor histidine kinase.
 
 
 0.635
ABC3647
Two-component sensor histidine kinase.
 
 
 0.551
ABC0414
Conserved hypothetical protein.
 
     0.536
ABC0417
Conserved hypothetical protein.
       0.523
ABC0418
Conserved hypothetical protein.
       0.523
ABC0899
Formate/nitrite transporter.
   
  
 0.464
braB
Branched-chain amino acid transport system carrier protein BraB; Component of the transport system for branched-chain amino acids.
      
 0.426
ABC0725
Two-component sensor histidine kinase.
 
  
 0.420
ABC3586
Two-component sensor histidine kinase.
 
  
 0.419
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.