STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0436Sugar ABC transporter substrate-binding protein. (432 aa)    
Predicted Functional Partners:
ABC0434
Sugar ABC transporter permease.
 
 0.974
ABC0435
Sugar ABC transporter permease.
 
 0.974
msmE
Sugar ABC transporter substrate-binding protein.
  
  
 
0.914
ABC3498
Sugar ABC transporter permease.
 
 0.906
msmX
Sugar ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.905
ABC3122
Sugar ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.905
ABC3497
Sugar ABC transporter permease.
 
 0.891
ABC0387
Lactose ABC transporter permease.
 
 
 0.656
ABC0396
Lactose ABC transporter permease.
 
 
 0.636
ABC0386
Lactose ABC transporter permease.
 
 
 0.630
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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