STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0468Conserved hypothetical protein. (498 aa)    
Predicted Functional Partners:
ABC0467
Conserved hypothetical protein.
 
  
 0.961
ABC1013
Conserved hypothetical protein.
 
  
 0.856
ABC3606
Conserved hypothetical protein.
 
  
 0.853
ABC0219
Conserved hypothetical protein.
 
  
 0.850
ABC3012
Conserved hypothetical protein.
 
  
 0.850
ABC0469
Hypothetical protein.
       0.730
ABC0626
Conserved hypothetical protein.
 
  
 0.727
ABC0470
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.541
ABC0471
5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
       0.498
ABC4040
TRAP-type transport system permease component.
  
     0.440
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.