Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC0475GntR family transcriptional regulator. (230 aa)    
Predicted Functional Partners:
ABC0476
Cyanate transporter.
 
     0.857
ABC0546
Transcriptional regulator.
 
  
 0.727
ABC1486
GntR family transcriptional regulator.
  
    0.696
ABC0840
GntR family transcriptional regulator.
 
  
 0.691
ABC0491
GntR family transcriptional regulator.
  
    0.679
ABC4081
GntR family transcriptional regulator.
 
  
 0.679
ABC1488
GntR family transcriptional regulator.
  
    0.674
ABC0645
GntR family transcriptional regulator.
  
    0.658
ABC2077
GntR family transcriptional regulator.
  
    0.646
treR
GntR family transcriptional repressor of trehalose operon.
  
    0.551
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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