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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0489Cell wall-binding protein; Probable gene remnant. Similar to the C-terminal region of transcriptional regulator fragment. (193 aa)    
Predicted Functional Partners:
ABC3063
Metalloendopeptidase.
  
 0.811
prkC
Serine/threonine protein kinase.
 
  
 0.493
cwlC
N-acetylmuramoyl-L-alanine amidase.
  
  
 0.477
rnmV
Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.
 
   
 0.460
ABC1938
Cell wall lytic activity.
 
  
 0.457
ABC3061
Serine protease.
 
   
 0.449
ftsX
Cell-division protein FtsX; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
  
 0.433
sigH
DNA-directed RNA polymerase sigma-30 factor sigma-H; Belongs to the sigma-70 factor family.
  
     0.418
lytE
Cell wall lytic activity endopeptidase.
  
 0.415
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.