Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABC0501Coproporphyrinogen III oxidase. (478 aa)    
Predicted Functional Partners:
ABC0500
Conserved hypothetical protein.
  
  
 0.810
ABC0505
Conserved hypothetical protein.
 
     0.778
ABC0502
Hypothetical protein.
       0.752
ABC0503
S-adenosylmethionine (SAM)-dependent methyltransferase.
       0.752
ABC0504
Hypothetical protein.
       0.736
ABC0506
Major facilitator (MFS) superfamily protein.
       0.736
ABC0507
GNAT family acetyltransferase.
       0.736
rlmN
Conserved hypothetical protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
 
   
 0.662
gltA
Glutamate synthase large subunit.
     
 0.662
cfr
Florfenicol/chloramphenicol resistance protein; Specifically methylates position 8 of adenine 2503 in 23S rRNA. Confers resistance to some classes of antibiotics.
 
   
 0.632
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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