STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0545Conserved hypothetical protein; Belongs to the CoA-transferase III family. (403 aa)    
Predicted Functional Partners:
ABC0547
hydroxymethylglutaryl-CoA lyase.
 
  0.807
ABC0343
medium-chain-fatty-acid--CoA ligase.
 
  
 0.595
ABC0544
Sodium:pantothenate symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.551
ABC0546
Transcriptional regulator.
 
   
 0.535
ABC2990
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.519
mmgC
acyl-CoA dehydrogenase.
 
 0.451
ABC1506
butyryl-CoA dehydrogenase.
 
 0.450
ABC3617
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
  
 0.428
ABC2099
Short-chain-specific acyl-CoA dehydrogenase.
 
 
 0.424
ABC3467
Transporter.
 
  
 0.422
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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