STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0553AraC/XylS family transcriptional regulator. (307 aa)    
Predicted Functional Partners:
ABC1456
AraC/XylS family transcriptional regulator.
 
 
 0.832
ABC0403
AraC/XylS family transcriptional regulator.
 
 
 0.828
ABC1404
Transcriptional regulator.
 
 
 0.824
ABC3488
AraC/XylS family transcriptional regulator.
 
 
 0.816
ABC3475
AraC/XylS family transcriptional regulator.
  
   0.764
adaA
methylphosphotriester-DNA alkyltransferase.
 
     0.693
ABC3529
AraC/XylS family transcriptional regulator.
  
   0.681
ABC0726
Two-component response regulator.
 
     0.662
ABC3331
AraC/XylS family transcriptional regulator.
 
     0.652
ABC3285
AraC/XylS family transcriptional regulator.
 
 
0.636
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.