Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC0558Sugar ABC transporter substrate-binding protein. (540 aa)    
Predicted Functional Partners:
ABC0557
Sugar ABC transporter permease.
 
   0.926
ABC0556
Sugar ABC transporter permease.
 
  
 0.917
ABC0559
Conserved hypothetical protein.
 
    0.909
ABC0362
Polysaccharide ABC transporter permease.
 
   0.804
ABC1136
Polysaccharide ABC transporter permease.
 
   0.802
ABC3118
Sugar ABC transporter permease.
 
   0.802
ABC1146
Sugar ABC transporter permease.
 
   0.798
ABC0361
Polysaccharide ABC transporter permease.
 
  
 0.789
ABC1135
Polysaccharide ABC transporter permease.
 
  
 0.789
lplB
Sugar ABC transporter permease.
 
  
 0.787
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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