STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0558Sugar ABC transporter substrate-binding protein. (540 aa)    
Predicted Functional Partners:
ABC0557
Sugar ABC transporter permease.
 
 
 0.927
ABC0556
Sugar ABC transporter permease.
 
  
 0.906
ABC0559
Conserved hypothetical protein.
 
    0.900
ABC0362
Polysaccharide ABC transporter permease.
 
 
 0.807
ABC3118
Sugar ABC transporter permease.
 
 
 0.805
ABC1136
Polysaccharide ABC transporter permease.
 
 
 0.804
ABC1146
Sugar ABC transporter permease.
 
 
 0.800
ABC0361
Polysaccharide ABC transporter permease.
 
  
 0.783
ABC1135
Polysaccharide ABC transporter permease.
 
  
 0.783
lplB
Sugar ABC transporter permease.
 
  
 0.781
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.