STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0570Conserved hypothetical protein. (417 aa)    
Predicted Functional Partners:
ABC0569
Conserved hypothetical protein.
 
     0.937
ABC3512
Succinyl-diaminopimelate desuccinylase.
  
  
 
0.922
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
 0.913
ABC2432
Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.905
argD
Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 
 0.905
ABC2431
Peptidase; Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate.
    
  0.900
ABC0568
Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.800
ABC0566
Oligopeptide ABC transporter permease.
  
    0.790
ABC0567
Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.774
ABC0565
Oligopeptide ABC transporter permease.
       0.758
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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