STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0576Conserved hypothetical protein. (216 aa)    
Predicted Functional Partners:
ABC3151
Dehydrogenase.
 
     0.797
ABC0577
Oxidoreductase.
 
     0.790
ABC3279
Conserved hypothetical protein.
 
   
 0.701
ABC1147
Conserved hypothetical protein.
  
     0.698
ABC3284
Sugar phosphate isomerases/epimerase.
 
   
 0.680
ABC0412
Alpha-galactosidase.
  
     0.677
ABC0797
Sugar phosphate isomerases/epimerase.
 
   
 0.670
ABC1573
Trehalose utilization protein.
 
     0.663
cah
cephalosporin-C deacetylase.
  
     0.596
xylR
Transcriptional repressor of the xylose operon.
       0.534
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.