Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC0584Aminopeptidase T. (316 aa)    
Predicted Functional Partners:
ABC0583
Conserved hypothetical protein.
 
     0.906
ABC0582
Conserved hypothetical protein.
 
     0.887
ABC0579
Conserved hypothetical protein.
 
     0.860
ABC0581
Conserved hypothetical protein.
 
     0.850
ABC0580
Conserved hypothetical protein.
 
     0.847
ABC0585
Major facilitator (MFS) superfamily protein.
       0.773
ABC0586
Tautomerase; Belongs to the 4-oxalocrotonate tautomerase family.
       0.773
ABC0569
Conserved hypothetical protein.
 
     0.735
ABC0578
Conserved hypothetical protein.
 
   
 0.462
ABC0570
Conserved hypothetical protein.
 
   
 0.459
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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