Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC0625Conserved hypothetical protein. (496 aa)    
Predicted Functional Partners:
ABC0626
Conserved hypothetical protein.
 
  
 0.922
ABC0219
Conserved hypothetical protein.
 
  
 0.850
ABC0467
Conserved hypothetical protein.
 
  
 0.850
ABC1013
Conserved hypothetical protein.
 
  
 0.850
ABC3012
Conserved hypothetical protein.
 
  
 0.850
ABC3606
Conserved hypothetical protein.
 
  
 0.850
ABC0624
Hypothetical protein.
       0.811
ABC0623
Conserved hypothetical protein.
 
     0.749
ABC4040
TRAP-type transport system permease component.
  
     0.456
ABC3929
Conserved hypothetical protein.
 
    0.454
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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