STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0646Chitinase; Belongs to the glycosyl hydrolase 18 family. (598 aa)    
Predicted Functional Partners:
ABC3126
beta-N-acetylhexosaminidase.
  
  
 0.922
ABC0320
Mannan endo-1,4-beta-mannosidase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
 0.666
ABC0703
Endo-beta-1,3-glucanase.
  
  
 0.579
pelB
Pectate lyase.
  
   
 0.567
ABC1161
Chitin-binding protein.
   
0.564
ABC0645
GntR family transcriptional regulator.
 
     0.479
ABC1138
Conserved hypothetical protein.
 
   
 0.451
ABC0561
Conserved hypothetical protein.
  
 
 
 0.444
ABC3777
MarR family transcriptional regulator.
  
     0.428
ABC0647
Conserved hypothetical protein.
       0.413
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.