STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0646Chitinase; Belongs to the glycosyl hydrolase 18 family. (598 aa)    
Predicted Functional Partners:
ABC3126
beta-N-acetylhexosaminidase.
 
 
 0.924
ABC0320
Mannan endo-1,4-beta-mannosidase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
 0.693
ABC1161
Chitin-binding protein.
   
0.604
ABC0703
Endo-beta-1,3-glucanase.
  
  
 0.548
pelB
Pectate lyase.
  
   
 0.545
ABC0645
GntR family transcriptional regulator.
 
     0.482
qoxC
Cytochrome aa3 quinol oxidase subunit III QoxC.
    
 
 0.476
ctaE
Cytochrome caa3 oxidase subunit III CoxC.
    
 
 0.476
ABC1138
Conserved hypothetical protein.
 
   
 0.462
ctaC
Cytochrome caa3 oxidase subunit II CoxB; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 
 0.461
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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