Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC0648Conserved hypothetical protein. (118 aa)    
Predicted Functional Partners:
ABC0941
Conserved hypothetical protein.
  
     0.514
ABC2141
Conserved hypothetical protein; Belongs to the HesB/IscA family.
  
     0.506
ABC2406
Conserved hypothetical protein; Belongs to the UPF0223 family.
  
     0.473
ABC3718
Conserved hypothetical protein.
  
     0.473
ABC1978
Chloramphenicol acetyltransferase.
  
     0.471
ABC3168
Hypothetical protein.
   
    0.449
ABC3566
Collagen adhesion protein.
  
     0.435
ABC1356
Conserved hypothetical protein.
  
     0.426
ABC2295
Conserved hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
      
 0.421
ABC0688
Conserved hypothetical protein; Belongs to the WXG100 family.
      
 0.419
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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