STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gerKBSpore germination protein KB. (383 aa)    
Predicted Functional Partners:
gerKC
Spore germination protein KC.
 
  
 0.885
gerKA
Spore germination protein KA.
 
  
 0.864
gerBC
Spore germination protein.
 
  
 0.786
gerAC
Spore germination protein.
 
  
 0.773
ABC3703
Spore germination protein.
 
  
 0.768
ABC2003
Sopre germination protein.
 
  
 0.766
ABC2021
Spore germination protein.
 
  
 0.765
gerAA
Sopre germination protein.
 
  
 0.758
ABC2022
Spore germination protein.
  
     0.750
ABC0332
Germination protein.
 
  
 0.739
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.