STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0659Conserved hypothetical protein. (428 aa)    
Predicted Functional Partners:
ABC0660
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
     0.937
ABC0661
H+:gluconate symporter.
 
     0.819
ABC0658
Transcriptional regulator of sugar metabolism.
 
    0.809
ABC0306
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
     0.783
ABC4082
Conserved hypothetical protein.
  
     0.566
kdgT
2-keto-3-deoxygluconate permease.
 
   
 0.471
ABC0310
sigma-L-dependent transcriptional regulator.
 
     0.453
ABC0212
Conserved hypothetical protein.
  
     0.409
gerKA
Spore germination protein KA.
       0.408
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.