Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC0685Sugar ABC transporter substrate-binding protein. (425 aa)    
Predicted Functional Partners:
ABC0686
Sugar ABC transporter permease.
 
  0.989
ABC0687
Sugar ABC transporter permease.
 
   0.907
ABC3281
Sugar ABC transporter permease.
 
   0.691
ABC1214
Sugar ABC transporter permease.
 
   0.685
ABC3441
Sugar ABC transporter permease.
 
   0.672
ABC0317
Sugar ABC transporter permease.
 
   0.671
ABC0663
Sugar ABC transporter permease.
 
   0.664
ABC1215
Sugar ABC transporter permease.
 
   0.664
ABC0386
Lactose ABC transporter permease.
 
   0.655
ABC3583
Sugar ABC transporter permease.
 
   0.647
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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