STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0709Conserved hypothetical protein. (168 aa)    
Predicted Functional Partners:
ABC0708
Antimicrobial peptide ABC transporter permease.
 
     0.947
ABC0707
Antimicrobial peptide ABC transporter ATP-binding protein.
 
     0.835
ABC3575
Hypothetical protein.
  
     0.661
ABC0985
Sortase.
  
     0.436
ABC3904
Sortase.
  
     0.433
ABC0279
GNAT family acetyltransferase; Probable gene remnant. Similar to the C-terminal region of Bacillus subtilis YdfD protein SW:P96681 (482 aa); locus_tag:ABC0277.
 
     0.425
ABC1981
Conserved hypothetical protein.
  
     0.421
ABC1164
Conserved hypothetical protein.
  
     0.418
ABC0530
Conserved hypothetical protein.
  
    0.414
ABC0706
Hypothetical protein.
       0.404
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.